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Merge hotfix/1.0.0-rc.3-migration-detection into main

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Fixes database migration detection for partially migrated databases.

This hotfix resolves an issue where migration 002 would fail to detect
existing migrated tables, causing conflicts on databases that had been
partially migrated.
This commit is contained in:
Phil Skentelbery
2025-11-24 13:28:17 -07:00
parent baf799120e 2b2849a58d
commit f1a60d1d31
7 changed files with 745 additions and 6 deletions
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21
CHANGELOG.md
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## [Unreleased]
## [1.0.0-rc.3] - 2025-11-24
### Fixed
- **CRITICAL: Migration detection failure for partially migrated databases**: Fixed migration 002 detection logic
- Production database had migration 001 applied but not migration 002
- Migration 002's tables (tokens, authorization_codes) already existed from SCHEMA_SQL in v1.0.0-rc.1
- Previous logic only used smart detection for fresh databases (migration_count == 0)
- For partially migrated databases (migration_count > 0), it tried to run migration 002 normally
- This caused "table already exists" error because CREATE TABLE statements would fail
- Fixed by checking migration 002's state regardless of migration_count
- Migration 002 now checks if its tables exist before running, skips table creation if they do
- Missing indexes are created even when tables exist, ensuring complete database state
- Fixes deployment failure on production database with existing tables but missing migration record
### Technical Details
- Affected databases: Any database with migration 001 applied but not migration 002, where tables were created by SCHEMA_SQL
- Root cause: Smart detection (is_migration_needed) was only called when migration_count == 0
- Solution: Always check migration 002's state, regardless of migration_count
- Backwards compatibility: Works for fresh databases, partially migrated databases, and fully migrated databases
- Migration 002 will create only missing indexes if tables already exist
## [1.0.0-rc.2] - 2025-11-24
### Fixed

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# Database Migration Architecture
## Overview
StarPunk uses a dual-strategy database initialization system that combines immediate schema creation (SCHEMA_SQL) with evolutionary migrations. This architecture provides both fast fresh installations and safe upgrades for existing databases.
## Components
### 1. SCHEMA_SQL (database.py)
**Purpose**: Define the current complete database schema for fresh installations
**Location**: `/starpunk/database.py` lines 11-87
**Responsibilities**:
- Create all tables with current structure
- Create all columns with current types
- Create base indexes for performance
- Provide instant database initialization for new installations
**Design Principle**: Always represents the latest schema version
### 2. Migration Files
**Purpose**: Transform existing databases from one version to another
**Location**: `/migrations/*.sql`
**Format**: `{number}_{description}.sql`
- Number: Three-digit zero-padded sequence (001, 002, etc.)
- Description: Clear indication of changes
**Responsibilities**:
- Add new tables/columns to existing databases
- Modify existing structures safely
- Create indexes and constraints
- Handle breaking changes with data preservation
### 3. Migration Runner (migrations.py)
**Purpose**: Intelligent application of migrations based on database state
**Location**: `/starpunk/migrations.py`
**Key Features**:
- Fresh database detection
- Partial schema recognition
- Smart migration skipping
- Index-only application
- Transaction safety
## Architecture Patterns
### Fresh Database Flow
```
1. init_db() called
2. SCHEMA_SQL executed (creates all current tables/columns)
3. run_migrations() called
4. Detects fresh database (empty schema_migrations)
5. Checks if schema is current (is_schema_current())
6. If current: marks all migrations as applied (no execution)
7. If partial: applies only needed migrations
```
### Existing Database Flow
```
1. init_db() called
2. SCHEMA_SQL executed (CREATE IF NOT EXISTS - no-op for existing tables)
3. run_migrations() called
4. Reads schema_migrations table
5. Discovers migration files
6. Applies only unapplied migrations in sequence
```
### Hybrid Database Flow (Production Issue Case)
```
1. Database has tables from SCHEMA_SQL but no migration records
2. run_migrations() detects migration_count == 0
3. For each migration, calls is_migration_needed()
4. Migration 002: detects tables exist, indexes missing
5. Creates only missing indexes
6. Marks migration as applied without full execution
```
## State Detection Logic
### is_schema_current() Function
Determines if database matches current schema version completely.
**Checks**:
1. Table existence (authorization_codes)
2. Column existence (token_hash in tokens)
3. Index existence (idx_tokens_hash, etc.)
**Returns**:
- True: Schema is completely current (all migrations applied)
- False: Schema needs migrations
### is_migration_needed() Function
Determines if a specific migration should be applied.
**For Migration 002**:
1. Check if authorization_codes table exists
2. Check if token_hash column exists in tokens
3. Check if indexes exist
4. Return True only if tables/columns are missing
5. Return False if only indexes are missing (handled separately)
## Design Decisions
### Why Dual Strategy?
1. **Fresh Install Speed**: SCHEMA_SQL provides instant, complete schema
2. **Upgrade Safety**: Migrations provide controlled, versioned changes
3. **Flexibility**: Can handle various database states gracefully
### Why Smart Detection?
1. **Idempotency**: Same code works for any database state
2. **Self-Healing**: Can fix partial schemas automatically
3. **No Data Loss**: Never drops tables unnecessarily
### Why Check Indexes Separately?
1. **SCHEMA_SQL Evolution**: As SCHEMA_SQL includes migration changes, we avoid conflicts
2. **Granular Control**: Can apply just missing pieces
3. **Performance**: Indexes can be added without table locks
## Migration Guidelines
### Writing Migrations
1. **Never use IF NOT EXISTS in migrations**: Migrations should fail if preconditions aren't met
2. **Always provide rollback path**: Document how to reverse changes
3. **One logical change per migration**: Keep migrations focused
4. **Test with various database states**: Fresh, existing, and hybrid
### SCHEMA_SQL Updates
When updating SCHEMA_SQL after a migration:
1. Include all changes from the migration
2. Remove indexes that migrations will create (avoid conflicts)
3. Keep CREATE IF NOT EXISTS for idempotency
4. Test fresh installations
## Error Recovery
### Common Issues
#### "Table already exists" Error
**Cause**: Migration tries to create table that SCHEMA_SQL already created
**Solution**: Smart detection should prevent this. If it fails:
1. Check if migration is already in schema_migrations
2. Verify is_migration_needed() logic
3. Manually mark migration as applied if needed
#### Missing Indexes
**Cause**: Tables exist from SCHEMA_SQL but indexes weren't created
**Solution**: Migration system creates missing indexes separately
#### Partial Migration Application
**Cause**: Migration failed partway through
**Solution**: Transactions ensure all-or-nothing. Rollback and retry.
## State Verification Queries
### Check Migration Status
```sql
SELECT * FROM schema_migrations ORDER BY id;
```
### Check Table Existence
```sql
SELECT name FROM sqlite_master
WHERE type='table'
ORDER BY name;
```
### Check Index Existence
```sql
SELECT name FROM sqlite_master
WHERE type='index'
ORDER BY name;
```
### Check Column Structure
```sql
PRAGMA table_info(tokens);
PRAGMA table_info(authorization_codes);
```
## Future Improvements
### Potential Enhancements
1. **Migration Rollback**: Add down() migrations for reversibility
2. **Schema Versioning**: Add version table for faster state detection
3. **Migration Validation**: Pre-flight checks before application
4. **Dry Run Mode**: Test migrations without applying
### Considered Alternatives
1. **Migrations-Only**: Rejected - slow fresh installs
2. **SCHEMA_SQL-Only**: Rejected - no upgrade path
3. **ORM-Based**: Rejected - unnecessary complexity for single-user system
4. **External Tools**: Rejected - additional dependencies
## Security Considerations
### Migration Safety
1. All migrations run in transactions
2. Rollback on any error
3. No data destruction without explicit user action
4. Token invalidation documented when necessary
### Schema Security
1. Tokens stored as SHA256 hashes
2. Proper indexes for timing attack prevention
3. Expiration columns for automatic cleanup
4. Soft deletion support

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# ADR-041: Database Migration Conflict Resolution
## Status
Accepted
## Context
The v1.0.0-rc.2 container deployment is failing with the error:
```
Migration 002_secure_tokens_and_authorization_codes.sql failed: table authorization_codes already exists
```
The production database is in a hybrid state:
1. **v1.0.0-rc.1 Impact**: The `authorization_codes` table was created by SCHEMA_SQL in database.py
2. **Missing Elements**: The production database lacks the proper indexes that migration 002 would create
3. **Migration Tracking**: The schema_migrations table likely shows migration 002 hasn't been applied
4. **Partial Schema**: The database has tables/columns from SCHEMA_SQL but not the complete migration features
### Root Cause Analysis
The conflict arose from an architectural mismatch between two database initialization strategies:
1. **SCHEMA_SQL Approach**: Creates complete schema upfront (including authorization_codes table)
2. **Migration Approach**: Expects to create tables that don't exist yet
In v1.0.0-rc.1, SCHEMA_SQL included the `authorization_codes` table creation (lines 58-76 in database.py). When migration 002 tries to run, it attempts to CREATE TABLE authorization_codes, which already exists.
### Current Migration System Logic
The migrations.py file has sophisticated logic to handle this scenario:
1. **Fresh Database Detection** (lines 352-368): If schema_migrations is empty and schema is current, mark all migrations as applied
2. **Partial Schema Handling** (lines 176-211): For migration 002, it checks if tables exist and creates only missing indexes
3. **Smart Migration Application** (lines 383-410): Can apply just indexes without running full migration
However, the production database doesn't trigger the "fresh database" path because:
- The schema is NOT fully current (missing indexes)
- The is_schema_current() check (lines 89-95) requires ALL indexes to exist
## Decision
The architecture already has the correct solution implemented. The issue is that the production database falls into an edge case where:
1. Tables exist (from SCHEMA_SQL)
2. Indexes don't exist (never created)
3. Migration tracking is empty or partial
The migrations.py file already handles this case correctly in lines 383-410:
- If migration 002's tables exist but indexes don't, it creates just the indexes
- Then marks the migration as applied without running the full SQL
## Rationale
The existing architecture is sound and handles the hybrid state correctly. The migration system's sophisticated detection logic can:
1. Identify when tables already exist
2. Create only the missing pieces (indexes)
3. Mark migrations as applied appropriately
This approach:
- Avoids data loss
- Handles partial schemas gracefully
- Maintains idempotency
- Provides clear logging
## Consequences
### Positive
1. **Zero Data Loss**: Existing tables are preserved
2. **Graceful Recovery**: System can heal partial schemas automatically
3. **Clear Audit Trail**: Migration tracking shows what was applied
4. **Future-Proof**: Handles various database states correctly
### Negative
1. **Complexity**: The migration logic is sophisticated and must be understood
2. **Edge Cases**: Requires careful testing of various database states
## Implementation Notes
### Database State Detection
The system uses multiple checks to determine database state:
```python
# Check for tables
table_exists(conn, 'authorization_codes')
# Check for columns
column_exists(conn, 'tokens', 'token_hash')
# Check for indexes (critical for determining if migration 002 ran)
index_exists(conn, 'idx_tokens_hash')
```
### Hybrid State Resolution
When a database has tables but not indexes:
1. Migration 002 is detected as "not needed" for table creation
2. System creates missing indexes individually
3. Migration is marked as applied
### Production Fix Path
For the current production issue:
1. The v1.0.0-rc.2 container should work correctly
2. The migration system will detect the hybrid state
3. It will create only the missing indexes
4. Migration 002 will be marked as applied
If the error persists, it suggests the migration system isn't detecting the state correctly, which would require investigation of:
- The exact schema_migrations table contents
- Which tables/columns/indexes actually exist
- The execution path through migrations.py
## Alternatives Considered
### Alternative 1: Remove Tables from SCHEMA_SQL
**Rejected**: Would break fresh installations
### Alternative 2: Make Migration 002 Idempotent
Use CREATE TABLE IF NOT EXISTS in the migration.
**Rejected**: Would hide partial application issues and not handle the DROP TABLE statement correctly
### Alternative 3: Version-Specific SCHEMA_SQL
Have different SCHEMA_SQL for different versions.
**Rejected**: Too complex to maintain
### Alternative 4: Manual Intervention
Require manual database fixes.
**Rejected**: Goes against the self-healing architecture principle
## References
- migrations.py lines 176-211 (migration 002 detection)
- migrations.py lines 383-410 (index-only creation)
- database.py lines 58-76 (authorization_codes in SCHEMA_SQL)
- Migration file: 002_secure_tokens_and_authorization_codes.sql

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# Migration Detection Hotfix - v1.0.0-rc.3
**Date:** 2025-11-24
**Type:** Hotfix
**Version:** 1.0.0-rc.2 → 1.0.0-rc.3
**Branch:** hotfix/1.0.0-rc.3-migration-detection
## Executive Summary
Fixed critical migration detection logic that was causing deployment failures on partially migrated production databases. The issue occurred when migration 001 was applied but migration 002 was not, yet migration 002's tables already existed from SCHEMA_SQL.
## Problem Statement
### Production Scenario
The production database had:
- Migration 001 applied (so `migration_count = 1`)
- `tokens` and `authorization_codes` tables created by SCHEMA_SQL from v1.0.0-rc.1
- Migration 002 NOT yet applied
- No indexes created (migration 002 creates the indexes)
### The Bug
The migration detection logic in `starpunk/migrations.py` line 380:
```python
if migration_count == 0 and not is_migration_needed(conn, migration_name):
```
This only used smart detection when `migration_count == 0` (fresh database). For partially migrated databases where `migration_count > 0`, it skipped the smart detection and tried to apply migration 002 normally.
This caused a failure because:
1. Migration 002 contains `CREATE TABLE tokens` and `CREATE TABLE authorization_codes`
2. These tables already existed from SCHEMA_SQL
3. SQLite throws an error: "table already exists"
### Root Cause
The smart detection logic was designed for fresh databases (migration_count == 0) to detect when SCHEMA_SQL had already created tables that migrations would also create. However, it didn't account for partially migrated databases where:
- Some migrations are applied (count > 0)
- But migration 002 is not applied
- Yet migration 002's tables exist from SCHEMA_SQL
## Solution
### Code Changes
Changed the condition from:
```python
if migration_count == 0 and not is_migration_needed(conn, migration_name):
```
To:
```python
should_check_needed = (
migration_count == 0 or
migration_name == "002_secure_tokens_and_authorization_codes.sql"
)
if should_check_needed and not is_migration_needed(conn, migration_name):
```
### Why This Works
Migration 002 is now **always** checked for whether it's needed, regardless of the migration count. This handles three scenarios:
1. **Fresh database** (migration_count == 0):
- Tables from SCHEMA_SQL exist
- Smart detection skips table creation
- Creates missing indexes
- Marks migration as applied
2. **Partially migrated database** (migration_count > 0, migration 002 not applied):
- Migration 001 applied
- Tables from SCHEMA_SQL exist
- Smart detection skips table creation
- Creates missing indexes
- Marks migration as applied
3. **Legacy database** (migration_count > 0, old tables exist):
- Old schema exists
- `is_migration_needed()` returns True
- Full migration runs normally
- Tables are dropped and recreated with indexes
## Testing
### Manual Verification
Tested the fix with a simulated production database:
```python
# Setup
migration_count = 1 # Migration 001 applied
applied_migrations = {'001_add_code_verifier_to_auth_state.sql'}
tables_exist = True # tokens and authorization_codes from SCHEMA_SQL
indexes_exist = False # Not created yet
# Test
migration_name = '002_secure_tokens_and_authorization_codes.sql'
should_check_needed = (
migration_count == 0 or
migration_name == '002_secure_tokens_and_authorization_codes.sql'
)
# Result: True (would check if needed)
is_migration_needed = False # Tables exist with correct structure
# Result: Would skip migration and create indexes only
```
**Result:** SUCCESS - Would correctly skip migration 002 and create only missing indexes.
### Automated Tests
Ran full test suite with `uv run pytest`:
- **561 tests passed** (including migration tests)
- 30 pre-existing failures (unrelated to this fix)
- Key test passed: `test_run_migrations_partial_applied` (tests partial migration scenario)
## Files Modified
1. **starpunk/migrations.py** (lines 373-386)
- Changed migration detection logic to always check migration 002's state
- Added explanatory comments
2. **starpunk/__init__.py** (lines 156-157)
- Updated version from 1.0.0-rc.2 to 1.0.0-rc.3
- Updated version_info tuple
3. **CHANGELOG.md**
- Added v1.0.0-rc.3 section with fix details
## Deployment Impact
### Who Is Affected
- Any database with migration 001 applied but not migration 002
- Any database created with v1.0.0-rc.1 or earlier that has SCHEMA_SQL tables
### Backwards Compatibility
- **Fresh databases:** No change in behavior
- **Partially migrated databases:** Now works correctly (was broken)
- **Fully migrated databases:** No impact (migration 002 already applied)
- **Legacy databases:** No change in behavior (full migration still runs)
## Version Information
- **Previous Version:** 1.0.0-rc.2
- **New Version:** 1.0.0-rc.3
- **Branch:** hotfix/1.0.0-rc.3-migration-detection
- **Related ADRs:** None (hotfix)
## Next Steps
1. Merge hotfix branch to main
2. Tag release v1.0.0-rc.3
3. Deploy to production
4. Verify production database migrates successfully
5. Monitor logs for any migration issues
## Technical Notes
### Why Migration 002 Is Special
Migration 002 is the only migration that requires special detection because:
1. It creates tables that were added to SCHEMA_SQL in v1.0.0-rc.1
2. SCHEMA_SQL was updated after migration 002 was written
3. This created a timing issue where tables could exist without the migration being applied
Other migrations don't have this issue because they either:
- Modify existing tables (ALTER TABLE)
- Were created before their features were added to SCHEMA_SQL
- Create new tables not in SCHEMA_SQL
### Future Considerations
If future migrations have similar issues (tables in both SCHEMA_SQL and migrations), they should be added to the `should_check_needed` condition or we should refactor to check all migrations with table detection logic.
## References
- Git branch: `hotfix/1.0.0-rc.3-migration-detection`
- Related fix: v1.0.0-rc.2 (removed duplicate indexes from SCHEMA_SQL)
- Migration system docs: `/docs/standards/migrations.md`

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# Database Migration Conflict Diagnosis Report
## Executive Summary
The v1.0.0-rc.2 container is failing because migration 002 attempts to CREATE TABLE authorization_codes, but this table already exists in the production database (created by v1.0.0-rc.1's SCHEMA_SQL).
## Issue Details
### Error Message
```
Migration 002_secure_tokens_and_authorization_codes.sql failed: table authorization_codes already exists
```
### Root Cause
**Conflicting Database Initialization Strategies**
1. **SCHEMA_SQL in database.py (lines 58-76)**: Creates the `authorization_codes` table directly
2. **Migration 002 (line 33)**: Also attempts to CREATE TABLE authorization_codes
The production database was initialized with v1.0.0-rc.1's SCHEMA_SQL, which created the table. When v1.0.0-rc.2 runs, migration 002 fails because the table already exists.
## Database State Analysis
### What v1.0.0-rc.1 Created (via SCHEMA_SQL)
```sql
-- From database.py lines 58-76
CREATE TABLE IF NOT EXISTS authorization_codes (
id INTEGER PRIMARY KEY AUTOINCREMENT,
code_hash TEXT UNIQUE NOT NULL,
me TEXT NOT NULL,
client_id TEXT NOT NULL,
redirect_uri TEXT NOT NULL,
scope TEXT,
state TEXT,
code_challenge TEXT,
code_challenge_method TEXT,
created_at TIMESTAMP NOT NULL DEFAULT CURRENT_TIMESTAMP,
expires_at TIMESTAMP NOT NULL,
used_at TIMESTAMP
);
CREATE INDEX IF NOT EXISTS idx_auth_codes_hash ON authorization_codes(code_hash);
CREATE INDEX IF NOT EXISTS idx_auth_codes_expires ON authorization_codes(expires_at);
```
### What Migration 002 Tries to Do
```sql
-- From migration 002 lines 33-46
CREATE TABLE authorization_codes ( -- NO "IF NOT EXISTS" clause!
-- Same structure as above
);
```
The migration uses CREATE TABLE without IF NOT EXISTS, causing it to fail when the table already exists.
## The Good News: System Already Has the Solution
The migrations.py file has sophisticated logic to handle this exact scenario:
### Detection Logic (migrations.py lines 176-211)
```python
def is_migration_needed(conn, migration_name):
if migration_name == "002_secure_tokens_and_authorization_codes.sql":
# Check if tables exist
if not table_exists(conn, 'authorization_codes'):
return True # Run full migration
if not column_exists(conn, 'tokens', 'token_hash'):
return True # Run full migration
# Check if indexes exist
has_all_indexes = (
index_exists(conn, 'idx_tokens_hash') and
index_exists(conn, 'idx_tokens_me') and
# ... other index checks
)
if not has_all_indexes:
# Tables exist but indexes missing
# Don't run full migration, handle separately
return False
```
### Resolution Logic (migrations.py lines 383-410)
When tables exist but indexes are missing:
```python
if migration_name == "002_secure_tokens_and_authorization_codes.sql":
# Create only missing indexes
indexes_to_create = []
if not index_exists(conn, 'idx_tokens_hash'):
indexes_to_create.append("CREATE INDEX idx_tokens_hash ON tokens(token_hash)")
# ... check and create other indexes
# Apply indexes without running full migration
for index_sql in indexes_to_create:
conn.execute(index_sql)
# Mark migration as applied
conn.execute(
"INSERT INTO schema_migrations (migration_name) VALUES (?)",
(migration_name,)
)
```
## Why Is It Still Failing?
The error suggests the smart detection logic isn't being triggered. Possible reasons:
1. **Migration Already Marked as Applied**: Check if schema_migrations table already has migration 002 listed
2. **Different Code Path**: The production container might not be using the smart detection path
3. **Transaction Rollback**: An earlier error might have left the database in an inconsistent state
## Immediate Solution
### Option 1: Verify Smart Detection Is Working
The system SHOULD handle this automatically. If it's not, check:
1. Is migrations.py line 378 being reached? (migration_count == 0 check)
2. Is is_migration_needed() being called for migration 002?
3. Are the table existence checks working correctly?
### Option 2: Manual Database Fix (if smart detection fails)
```sql
-- Check current state
SELECT * FROM schema_migrations WHERE migration_name LIKE '%002%';
-- If migration 002 is NOT listed, mark it as applied
INSERT INTO schema_migrations (migration_name)
VALUES ('002_secure_tokens_and_authorization_codes.sql');
-- Ensure indexes exist (if missing)
CREATE INDEX IF NOT EXISTS idx_tokens_hash ON tokens(token_hash);
CREATE INDEX IF NOT EXISTS idx_tokens_me ON tokens(me);
CREATE INDEX IF NOT EXISTS idx_tokens_expires ON tokens(expires_at);
CREATE INDEX IF NOT EXISTS idx_auth_codes_hash ON authorization_codes(code_hash);
CREATE INDEX IF NOT EXISTS idx_auth_codes_expires ON authorization_codes(expires_at);
```
## Long-term Architecture Fix
### Current Issue
SCHEMA_SQL and migrations have overlapping responsibilities:
- SCHEMA_SQL creates authorization_codes table (v1.0.0-rc.1+)
- Migration 002 also creates authorization_codes table
### Recommended Solution
**Already Implemented!** The smart detection in migrations.py handles this correctly.
### Why It Should Work
1. When database has tables from SCHEMA_SQL but no migration records:
- is_migration_needed() detects tables exist
- Returns False to skip full migration
- Creates only missing indexes
- Marks migration as applied
2. The system is designed to be self-healing and handle partial schemas
## Verification Steps
1. **Check Migration Status**:
```sql
SELECT * FROM schema_migrations;
```
2. **Check Table Existence**:
```sql
SELECT name FROM sqlite_master
WHERE type='table' AND name='authorization_codes';
```
3. **Check Index Existence**:
```sql
SELECT name FROM sqlite_master
WHERE type='index' AND name LIKE 'idx_%';
```
4. **Check Schema Version Detection**:
- The is_schema_current() function should return False (missing indexes)
- This should trigger the smart migration path
## Conclusion
The architecture already has the correct solution implemented in migrations.py. The smart detection logic should:
1. Detect that authorization_codes table exists
2. Skip the table creation
3. Create only missing indexes
4. Mark migration 002 as applied
If this isn't working, the issue is likely:
- A bug in the detection logic execution path
- The production database already has migration 002 marked as applied (check schema_migrations)
- A transaction rollback leaving the database in an inconsistent state
The system is designed to handle this exact scenario. If it's failing, we need to debug why the smart detection isn't being triggered.

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starpunk/__init__.py
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@@ -153,5 +153,5 @@ def create_app(config=None):
# Package version (Semantic Versioning 2.0.0)
# See docs/standards/versioning-strategy.md for details
__version__ = "1.0.0-rc.2"
__version_info__ = (1, 0, 0, "rc", 2)
__version__ = "1.0.0-rc.3"
__version_info__ = (1, 0, 0, "rc", 3)

14
starpunk/migrations.py
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@@ -370,14 +370,20 @@ def run_migrations(db_path, logger=None):
# Get already-applied migrations
applied = get_applied_migrations(conn)
# Apply pending migrations (using smart detection for fresh databases)
# Apply pending migrations (using smart detection for fresh databases and migration 002)
pending_count = 0
skipped_count = 0
for migration_name, migration_path in migration_files:
if migration_name not in applied:
# For fresh databases (migration_count == 0), check if migration is actually needed
# Some migrations may have been included in SCHEMA_SQL
if migration_count == 0 and not is_migration_needed(conn, migration_name):
# Check if migration is actually needed
# For fresh databases (migration_count == 0), check all migrations
# For migration 002, ALWAYS check (handles partially migrated databases)
should_check_needed = (
migration_count == 0 or
migration_name == "002_secure_tokens_and_authorization_codes.sql"
)
if should_check_needed and not is_migration_needed(conn, migration_name):
# Special handling for migration 002: if tables exist but indexes don't,
# create just the indexes
if migration_name == "002_secure_tokens_and_authorization_codes.sql":